Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10171004	0.85[AFR][1000 genomes]
rs10196555	0.96[ASN][1000 genomes]
rs1073280	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1109351	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1110585	0.98[ASN][1000 genomes]
rs1111235	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12713581	0.96[ASN][1000 genomes]
rs12713582	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13008648	0.82[ASN][1000 genomes]
rs13018976	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13031245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13420432	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2194662	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2194664	0.92[ASN][1000 genomes]
rs2194665	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2194667	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2216925	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4671751	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4671754	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6546270	0.92[ASN][1000 genomes]
rs7599395	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9798168	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874247	chr2:67105342-67141322	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67112400-67113200	Enhancers	Rectal Smooth Muscle	rectum
2	chr2:67112400-67117800	Enhancers	Colon Smooth Muscle	Colon
3	chr2:67112600-67113200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:67112600-67113200	Enhancers	NHLF	lung
5	chr2:67112800-67113400	Enhancers	Fetal Lung	lung
6	chr2:67112800-67114800	Enhancers	Stomach Smooth Muscle	stomach
7	chr2:67112800-67124200	Weak transcription	Pancreas	Pancrea

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