Variant report

Variant	rs6549053
Chromosome Location	chr3:85820466-85820467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11711972	0.95[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1375218	0.91[CEU][hapmap]
rs1375219	0.91[CEU][hapmap]
rs1448607	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1448616	0.91[CEU][hapmap]
rs1839171	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2325037	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2875529	0.85[ASN][1000 genomes]
rs3901898	0.91[CEU][hapmap]
rs3906942	0.88[EUR][1000 genomes]
rs3930071	0.84[CEU][hapmap]
rs4129497	0.81[EUR][1000 genomes]
rs4302393	0.81[EUR][1000 genomes]
rs4488844	0.83[CEU][hapmap]
rs4504176	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4555536	0.95[CEU][hapmap]
rs4555539	0.83[CEU][hapmap]
rs4856279	0.92[CEU][hapmap]
rs6549054	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6549055	0.93[ASN][1000 genomes]
rs6787901	0.84[CEU][hapmap]
rs6796380	0.83[CEU][hapmap]
rs6796402	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6799453	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs7429346	0.88[EUR][1000 genomes]
rs7611409	0.95[CEU][hapmap]
rs7612371	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7621146	0.91[CEU][hapmap]
rs7637221	0.92[CEU][hapmap]
rs7638774	0.95[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7642281	0.83[CEU][hapmap]
rs7653470	0.96[CEU][hapmap]
rs9309992	0.83[CEU][hapmap]
rs9681744	0.95[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9836755	0.89[ASN][1000 genomes]
rs9843797	0.95[CEU][hapmap]
rs9864042	0.95[CEU][hapmap]
rs9876664	0.85[ASN][1000 genomes]
rs9881886	0.95[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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