Variant report

Variant	rs6561704
Chromosome Location	chr13:53712059-53712060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17054184	0.83[AMR][1000 genomes]
rs7334325	1.00[AMR][1000 genomes]
rs73482951	0.83[AMR][1000 genomes]
rs73484973	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484977	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7992838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7993837	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53708800-53715200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:53710000-53715600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:53710200-53713000	Enhancers	Fetal Stomach	stomach
4	chr13:53710600-53712800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr13:53711200-53717200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:53711400-53712600	Enhancers	Adipose Nuclei	Adipose
7	chr13:53711800-53713200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:53712000-53712200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:53712000-53712200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:53712000-53712400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:53712000-53712800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr13:53712000-53712800	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr13:53712000-53713000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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