Variant report

Variant	rs7334325
Chromosome Location	chr13:53637639-53637640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17054184	0.83[AMR][1000 genomes]
rs6561704	1.00[AMR][1000 genomes]
rs73482951	0.83[AMR][1000 genomes]
rs73484973	1.00[AMR][1000 genomes]
rs73484977	1.00[AMR][1000 genomes]
rs7992838	1.00[AMR][1000 genomes]
rs7993837	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53625000-53638800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr13:53633200-53642200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:53634600-53637800	Weak transcription	Pancreas	Pancrea
4	chr13:53635000-53637800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:53635600-53641600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr13:53636200-53641600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:53636200-53642400	Weak transcription	Brain Anterior Caudate	brain
8	chr13:53636400-53642200	Weak transcription	Brain Hippocampus Middle	brain
9	chr13:53636600-53642000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr13:53636600-53642200	Weak transcription	Brain Angular Gyrus	brain
11	chr13:53636800-53641600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:53637200-53638400	Weak transcription	Brain Germinal Matrix	brain
13	chr13:53637600-53641600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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