Variant report

Variant	rs73484973
Chromosome Location	chr13:53701403-53701404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17054184	0.83[AMR][1000 genomes]
rs6561704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7334325	1.00[AMR][1000 genomes]
rs73482951	0.83[AMR][1000 genomes]
rs73484977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7992838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7993837	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53696600-53703800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr13:53697800-53709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:53699600-53701800	Enhancers	Fetal Muscle Leg	muscle
4	chr13:53700400-53702000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:53700400-53702200	Enhancers	Fetal Stomach	stomach
6	chr13:53700400-53702600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:53700600-53701800	Enhancers	Fetal Lung	lung
8	chr13:53700600-53702000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:53700600-53702000	Enhancers	Adipose Nuclei	Adipose
10	chr13:53701400-53701600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:53701400-53701800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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