Variant report

Variant	rs73484977
Chromosome Location	chr13:53704027-53704028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17054184	0.83[AMR][1000 genomes]
rs6561704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7334325	1.00[AMR][1000 genomes]
rs73482951	0.83[AMR][1000 genomes]
rs73484973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7992838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7993837	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv819784	chr13:53703441-53705578	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53697800-53709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53703800-53704600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:53704000-53704200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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