Variant report
| Variant | rs6573590 |
|---|---|
| Chromosome Location | chr14:65586097-65586098 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:65584828..65586743-chr14:65596028..65597977,2 | MCF-7 | breast: | |
| 2 | chr14:65583908..65586775-chr14:65587093..65588708,2 | MCF-7 | breast: | |
| 3 | chr14:65585087..65587608-chr14:65878373..65880276,2 | MCF-7 | breast: | |
| 4 | chr14:65583773..65586772-chr9:138391017..138393563,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000160345 | Chromatin interaction |
| ENSG00000122140 | Chromatin interaction |
| ENSG00000033170 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs11626796 | 0.83[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1256415 | 0.82[ASN][1000 genomes] |
| rs1262269 | 0.84[ASN][1000 genomes] |
| rs12895232 | 0.87[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1953230 | 0.88[ASN][1000 genomes] |
| rs1953231 | 0.88[ASN][1000 genomes] |
| rs2781371 | 0.88[ASN][1000 genomes] |
| rs945014 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832816 | chr14:65473244-65644645 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
