Variant report

Variant	rs12895232
Chromosome Location	chr14:65585219-65585220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65519532..65520411-chr14:65584848..65585759,5	MCF-7	breast:
2	chr14:65583698..65586091-chr14:65722041..65724216,2	MCF-7	breast:
3	chr14:65584759..65585412-chr14:65787360..65787996,3	MCF-7	breast:
4	chr14:65584828..65586743-chr14:65596028..65597977,2	MCF-7	breast:
5	chr14:65576816..65577740-chr14:65584902..65585481,4	MCF-7	breast:
6	chr11:20158178..20158698-chr14:65584825..65585404,3	MCF-7	breast:
7	chr11:20158173..20158698-chr14:65584825..65585404,5	MCF-7	breast:
8	chr14:65576977..65577806-chr14:65584854..65585746,5	MCF-7	breast:
9	chr14:65583908..65586775-chr14:65587093..65588708,2	MCF-7	breast:
10	chr14:65283734..65284423-chr14:65584826..65585837,5	MCF-7	breast:
11	chr14:65519613..65520411-chr14:65584901..65585759,3	MCF-7	breast:
12	chr14:65576977..65577806-chr14:65584796..65585746,6	MCF-7	breast:
13	chr14:65584893..65585649-chr14:65593462..65594392,6	MCF-7	breast:
14	chr14:65585087..65587608-chr14:65878373..65880276,2	MCF-7	breast:
15	chr14:65583773..65586772-chr9:138391017..138393563,2	MCF-7	breast:
16	chr14:65568779..65571634-chr14:65582917..65585589,3	MCF-7	breast:
17	chr14:65584840..65585848-chr14:65787349..65788348,7	MCF-7	breast:
18	chr14:65565119..65567399-chr14:65583912..65586041,2	MCF-7	breast:
19	chr14:65283473..65284423-chr14:65584826..65585837,6	MCF-7	breast:
20	chr14:65583338..65585299-chr14:65708352..65712057,3	MCF-7	breast:
21	chr14:65584893..65585609-chr14:65593534..65594392,3	MCF-7	breast:
22	chr14:65584842..65585718-chr14:65787405..65788348,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000257365	Chromatin interaction
ENSG00000122140	Chromatin interaction
ENSG00000160345	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11626796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12101257	0.93[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1256415	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1256416	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12588412	0.82[EUR][1000 genomes]
rs12590701	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1262269	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1953230	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1953231	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1953233	0.88[CHB][hapmap]
rs1957947	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2225676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs2277500	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];1.00[EUR][1000 genomes]
rs2411995	0.82[ASN][1000 genomes]
rs2781371	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573590	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7151350	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7152879	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7153893	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs8011293	0.81[CHB][hapmap]
rs945013	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs945014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65583800-65585400	Enhancers	Lung	lung
2	chr14:65584400-65585400	Enhancers	Ovary	ovary
3	chr14:65584600-65585400	Enhancers	Esophagus	oesophagus
4	chr14:65584600-65585400	Enhancers	Fetal Intestine Small	intestine
5	chr14:65584600-65585400	Enhancers	Left Ventricle	heart
6	chr14:65584600-65585400	Enhancers	Right Atrium	heart
7	chr14:65584600-65585400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr14:65584600-65585400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr14:65584800-65585400	Enhancers	Fetal Heart	heart
10	chr14:65585000-65585400	Enhancers	HSMMtube	muscle
11	chr14:65585200-65585400	Enhancers	Muscle Satellite Cultured Cells	--

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