Variant report

Variant	rs945013
Chromosome Location	chr14:65574318-65574319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr14:65573881-65574489	K562	blood:	n/a	n/a
2	CEBPD	chr14:65573790-65574434	K562	blood:	n/a	n/a
3	TBL1XR1	chr14:65573915-65574372	K562	blood:	n/a	n/a
4	POLR2A	chr14:65573925-65574326	K562	blood:	n/a	n/a
5	RCOR1	chr14:65573780-65574354	K562	blood:	n/a	n/a
6	GATA1	chr14:65573738-65574911	K562	blood:	n/a	n/a
7	CEBPD	chr14:65573819-65574433	K562	blood:	n/a	n/a
8	GATA2	chr14:65573802-65574351	K562	blood:	n/a	n/a
9	NR2F2	chr14:65573796-65574365	K562	blood:	n/a	n/a
10	TAL1	chr14:65573908-65574427	K562	blood:	n/a	chr14:65574039-65574047
11	STAT5A	chr14:65573837-65574398	K562	blood:	n/a	n/a
12	ATF1	chr14:65573912-65574350	K562	blood:	n/a	n/a
13	MYC	chr14:65574000-65574743	K562	blood:	n/a	n/a
14	GATA1	chr14:65573501-65574399	PBDE	blood:	n/a	chr14:65573675-65573684 chr14:65573678-65573687
15	EP300	chr14:65573765-65574593	K562	blood:	n/a	n/a
16	ARID3A	chr14:65573750-65574459	K562	blood:	n/a	n/a
17	TEAD4	chr14:65573858-65574357	K562	blood:	n/a	n/a
18	STAT5A	chr14:65573853-65574324	K562	blood:	n/a	n/a
19	TBL1XR1	chr14:65574008-65574356	K562	blood:	n/a	n/a
20	PML	chr14:65573876-65574356	K562	blood:	n/a	chr14:65574140-65574148
21	JUND	chr14:65573821-65574765	K562	blood:	n/a	n/a
22	MAZ	chr14:65573962-65574338	K562	blood:	n/a	n/a
23	USF1	chr14:65574001-65574330	K562	blood:	n/a	n/a
24	PML	chr14:65573842-65574336	K562	blood:	n/a	chr14:65574140-65574148
25	TEAD4	chr14:65573827-65574402	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:65568317..65571529-chr14:65572429..65574819,6	K562	blood:
2	chr14:65568455..65570560-chr14:65571805..65574356,2	MCF-7	breast:
3	chr14:65568317..65571554-chr14:65571608..65574819,5	K562	blood:

Variant related genes	Relation type
MAX	TF binding region
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10142987	0.82[CHB][hapmap]
rs10149182	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11626796	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12101257	0.83[CHB][hapmap];0.80[YRI][hapmap]
rs1256415	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs1256416	1.00[CEU][hapmap]
rs12588378	0.82[CHB][hapmap]
rs12590701	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1262269	0.86[AMR][1000 genomes]
rs12895232	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1953230	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1953231	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1953233	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1957947	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2225676	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs2277500	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2411995	0.97[ASN][1000 genomes]
rs2781371	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7151350	0.93[AMR][1000 genomes]
rs7153893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007110	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs8007538	0.82[CHB][hapmap]
rs8011293	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8181931	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs945014	0.89[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65572400-65575000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:65572800-65574800	Enhancers	Primary hematopoietic stem cells	blood
3	chr14:65573200-65574800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:65573400-65574600	Enhancers	GM12878-XiMat	blood
5	chr14:65573800-65574400	Enhancers	Fetal Heart	heart
6	chr14:65574000-65574400	Enhancers	Dnd41	blood
7	chr14:65574000-65574600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:65574000-65574600	Flanking Active TSS	K562	blood
9	chr14:65574200-65574800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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