Variant report

Variant	rs2225676
Chromosome Location	chr14:65594460-65594461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11626796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101257	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs1256415	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1256416	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12588412	0.82[EUR][1000 genomes]
rs12590701	1.00[EUR][1000 genomes]
rs1262269	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12895232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1953230	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1953231	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1953233	0.88[CHB][hapmap]
rs1957947	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2277500	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2411995	0.81[ASN][1000 genomes]
rs2781371	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573590	0.92[ASN][1000 genomes]
rs7151350	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7152879	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7153893	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs8011293	0.81[CHB][hapmap]
rs945013	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[EUR][1000 genomes]
rs945014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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