Variant report

Variant	rs1953233
Chromosome Location	chr14:65573162-65573163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10142987	0.82[CHB][hapmap]
rs10149182	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11626796	0.88[CHB][hapmap]
rs12101257	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs12588378	0.82[CHB][hapmap]
rs12895232	0.88[CHB][hapmap]
rs1953230	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs1953231	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs2225676	0.88[CHB][hapmap]
rs2277500	0.82[CHB][hapmap]
rs2411995	0.97[ASN][1000 genomes]
rs2781371	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs7153893	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8007110	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs8007538	0.82[CHB][hapmap]
rs8011293	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181931	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs945013	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs945014	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65570400-65573800	Weak transcription	Fetal Heart	heart
2	chr14:65570600-65573200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:65570600-65573400	Weak transcription	GM12878-XiMat	blood
4	chr14:65570600-65574000	Weak transcription	Dnd41	blood
5	chr14:65570600-65574200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:65572400-65575000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:65572800-65574000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:65572800-65574000	Enhancers	K562	blood
9	chr14:65572800-65574800	Enhancers	Primary hematopoietic stem cells	blood
10	chr14:65573000-65573200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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