Variant report
| Variant | rs11626796 |
|---|---|
| Chromosome Location | chr14:65596148-65596149 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000033170 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12101257 | 0.94[CHB][hapmap];0.89[JPT][hapmap] |
| rs1256415 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1256416 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs12588412 | 0.82[EUR][1000 genomes] |
| rs12590701 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1262269 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12895232 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1953230 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1953231 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1953233 | 0.88[CHB][hapmap] |
| rs1957947 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2225676 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs2277500 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs2411995 | 0.81[ASN][1000 genomes] |
| rs2781371 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6573590 | 0.83[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7151350 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7152879 | 0.84[JPT][hapmap] |
| rs7153893 | 1.00[CEU][hapmap];0.88[CHB][hapmap] |
| rs8011293 | 0.82[CHB][hapmap] |
| rs945013 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs945014 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832816 | chr14:65473244-65644645 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | esv1833060 | chr14:65594460-65607642 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
