Variant report

Variant	rs1262269
Chromosome Location	chr14:65566281-65566282
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65564920..65566540-chr14:65567299..65570030,2	MCF-7	breast:
2	chr14:65565119..65567399-chr14:65583912..65586041,2	MCF-7	breast:
3	chr14:65563116..65565005-chr14:65565094..65566679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11626796	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12101257	0.82[ASN][1000 genomes]
rs1256415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12588412	0.91[EUR][1000 genomes]
rs12590701	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12895232	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1953230	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1953231	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1957947	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2277500	0.90[EUR][1000 genomes]
rs2781371	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573590	0.84[ASN][1000 genomes]
rs7151350	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs945013	0.86[AMR][1000 genomes]
rs945014	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65556400-65567200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:65556400-65567600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:65556400-65569000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:65556800-65567800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:65557200-65566800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:65557600-65568000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:65560600-65567800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:65560600-65568000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:65560800-65568400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:65561000-65567400	Weak transcription	A549	lung
11	chr14:65561000-65567800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:65561600-65567800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:65561600-65568400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:65561800-65566800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:65562400-65567200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:65562400-65567600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:65562800-65567800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:65562800-65568400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:65563000-65567400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:65563400-65566800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:65563400-65568000	Weak transcription	Aorta	Aorta
22	chr14:65563400-65568000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr14:65563600-65567400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:65563600-65567800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:65563600-65567800	Weak transcription	Fetal Brain Male	brain
26	chr14:65563800-65567400	Weak transcription	Fetal Kidney	kidney
27	chr14:65563800-65567600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:65563800-65567800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:65563800-65567800	Weak transcription	Esophagus	oesophagus
30	chr14:65563800-65568000	Weak transcription	Lung	lung
31	chr14:65563800-65568400	Weak transcription	Pancreas	Pancrea
32	chr14:65563800-65568600	Weak transcription	Spleen	Spleen
33	chr14:65564000-65566800	Weak transcription	Left Ventricle	heart
34	chr14:65564000-65567200	Weak transcription	Fetal Brain Female	brain
35	chr14:65564000-65567400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:65564000-65567400	Weak transcription	HMEC	breast
37	chr14:65564000-65567800	Weak transcription	Brain Angular Gyrus	brain
38	chr14:65564000-65567800	Weak transcription	Fetal Stomach	stomach
39	chr14:65564200-65567400	Weak transcription	Brain Germinal Matrix	brain
40	chr14:65564200-65567600	Weak transcription	HSMMtube	muscle
41	chr14:65564200-65568400	Weak transcription	Gastric	stomach
42	chr14:65564400-65567600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:65564600-65567200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr14:65564600-65567600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr14:65564800-65568200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:65565000-65567400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:65565000-65567400	Weak transcription	NH-A	brain
48	chr14:65565000-65568200	Weak transcription	Ovary	ovary
49	chr14:65565200-65567000	Weak transcription	Small Intestine	intestine
50	chr14:65565200-65567400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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