Variant report

Variant	rs6586126
Chromosome Location	chr10:90105898-90105899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89619839..89624557-chr10:90105061..90108196,4	MCF-7	breast:
2	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10788590	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426621	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2872069	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100373	1.00[ASN][1000 genomes]
rs7906629	0.91[ASN][1000 genomes]
rs7914501	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90102000-90106600	Weak transcription	Right Atrium	heart
2	chr10:90103400-90106600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:90103800-90106200	Weak transcription	Stomach Mucosa	stomach
4	chr10:90103800-90107200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:90104000-90107800	Weak transcription	Adipose Nuclei	Adipose
6	chr10:90104000-90108000	Weak transcription	Ovary	ovary
7	chr10:90104200-90106400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:90104200-90106400	Weak transcription	Fetal Lung	lung
9	chr10:90104200-90107000	Weak transcription	HSMMtube	muscle
10	chr10:90104400-90106000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:90104400-90106000	Weak transcription	Liver	Liver
12	chr10:90104400-90109000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:90104600-90107200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:90104600-90108200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:90104800-90106800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:90104800-90108400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:90104800-90108800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:90104800-90108800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:90104800-90109200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:90105000-90106000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr10:90105000-90107800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:90105400-90106200	Enhancers	Primary B cells from cord blood	blood
23	chr10:90105400-90106600	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr10:90105600-90106600	Enhancers	A549	lung
25	chr10:90105600-90108200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr10:90105800-90106600	Enhancers	Dnd41	blood
27	chr10:90105800-90107400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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