Variant report

Variant	rs7914501
Chromosome Location	chr10:90093472-90093473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10788590	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1426621	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2488273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs2872069	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6586126	1.00[ASN][1000 genomes]
rs701892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs7100373	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs792219	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs792222	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs806695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90084600-90103600	Weak transcription	Ovary	ovary
2	chr10:90089000-90093800	Enhancers	Dnd41	blood
3	chr10:90089600-90094200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:90090000-90096600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:90090800-90093800	Enhancers	Primary B cells from cord blood	blood
6	chr10:90090800-90093800	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:90091000-90094400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr10:90091000-90095000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:90091600-90093800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:90091600-90094400	Enhancers	Primary T cells from cord blood	blood
11	chr10:90091800-90093800	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:90091800-90093800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:90092000-90093800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr10:90092800-90093600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr10:90093400-90095800	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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