Variant report

Variant	rs792219
Chromosome Location	chr10:90139234-90139235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10788590	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1426621	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2488273	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs701892	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7906629	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs7914501	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs792217	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs792222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs806695	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90134600-90139600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:90134800-90139400	Weak transcription	Small Intestine	intestine
3	chr10:90134800-90139400	Weak transcription	GM12878-XiMat	blood
4	chr10:90135400-90139400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:90135800-90144800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:90136000-90140400	Weak transcription	Primary B cells from cord blood	blood
7	chr10:90137000-90139400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:90139000-90139800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:90139200-90139600	Weak transcription	Fetal Thymus	thymus
10	chr10:90139200-90139800	Enhancers	Duodenum Mucosa	Duodenum
11	chr10:90139200-90139800	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr10:90139200-90139800	Enhancers	NHDF-Ad	bronchial
13	chr10:90139200-90140000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:90139200-90140000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:90139200-90140000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:90139200-90140000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:90139200-90140000	Enhancers	Fetal Intestine Small	intestine
18	chr10:90139200-90140000	Enhancers	A549	lung
19	chr10:90139200-90140200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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