Variant report

Variant	rs792217
Chromosome Location	chr10:90140257-90140258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2488273	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs701892	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7100373	0.82[AMR][1000 genomes]
rs792219	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs792222	0.89[ASN][1000 genomes]
rs806695	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90135800-90144800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:90136000-90140400	Weak transcription	Primary B cells from cord blood	blood
3	chr10:90139800-90144000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:90139800-90144200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:90139800-90144200	Weak transcription	Fetal Thymus	thymus
6	chr10:90139800-90144600	Weak transcription	Small Intestine	intestine
7	chr10:90139800-90144600	Weak transcription	Thymus	Thymus
8	chr10:90139800-90144800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:90139800-90144800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:90139800-90145200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:90139800-90145200	Weak transcription	NHDF-Ad	bronchial
12	chr10:90139800-90146400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:90140000-90143200	Weak transcription	Fetal Intestine Large	intestine
14	chr10:90140000-90143200	Weak transcription	Fetal Intestine Small	intestine
15	chr10:90140000-90144600	Weak transcription	A549	lung
16	chr10:90140000-90144600	Weak transcription	HMEC	breast
17	chr10:90140000-90145400	Weak transcription	Osteobl	bone
18	chr10:90140200-90141800	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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