Variant report

Variant	rs806695
Chromosome Location	chr10:90108038-90108039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89622149..89624843-chr10:90106661..90108440,2	MCF-7	breast:
2	chr10:89619839..89624557-chr10:90105061..90108196,4	MCF-7	breast:
3	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10788590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1426621	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2488273	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs701892	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100373	0.87[AMR][1000 genomes]
rs7906629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs7914501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs792217	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs792219	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs792222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90104400-90109000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:90104600-90108200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:90104800-90108400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:90104800-90108800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:90104800-90108800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:90104800-90109200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:90105600-90108200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr10:90106000-90108200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:90106200-90108400	Weak transcription	Primary B cells from cord blood	blood
10	chr10:90106400-90108600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:90106400-90108800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:90106600-90108200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:90106800-90108200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:90107000-90108200	Weak transcription	Fetal Kidney	kidney
15	chr10:90107200-90108200	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:90107800-90108200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:90107800-90108200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:90107800-90108200	Enhancers	Adipose Nuclei	Adipose
19	chr10:90107800-90108200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr10:90107800-90108400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr10:90107800-90108400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr10:90107800-90108600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:90107800-90108600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:90107800-90108600	Enhancers	Dnd41	blood
25	chr10:90107800-90109000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr10:90108000-90108200	Enhancers	Ovary	ovary

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