Variant report

Variant	rs6589879
Chromosome Location	chr11:121250232-121250233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10750191	0.94[ASN][1000 genomes]
rs12575786	0.99[ASN][1000 genomes]
rs12785891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1560405	0.94[ASN][1000 genomes]
rs1560408	0.94[ASN][1000 genomes]
rs297490	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs297491	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs297492	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57320113	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589880	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7102251	0.83[EUR][1000 genomes]
rs7102477	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116595	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs99672	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6589879	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs6589879	C11orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
2	chr11:121242600-121251200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:121243000-121251000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr11:121244200-121251200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr11:121244800-121260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:121245600-121251000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:121246400-121250800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr11:121246800-121251200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr11:121247000-121251200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:121247000-121251200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr11:121248200-121251200	Enhancers	Primary T cells from cord blood	blood
12	chr11:121248400-121250400	Enhancers	Dnd41	blood
13	chr11:121248400-121250800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr11:121248800-121250800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:121248800-121251200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:121249000-121250600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr11:121249600-121250400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr11:121249600-121250400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:121249600-121250400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:121249600-121250400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:121249600-121250400	Enhancers	Fetal Thymus	thymus
22	chr11:121249600-121250800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:121249600-121251200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr11:121249600-121251200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr11:121250000-121250600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:121250200-121250400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr11:121250200-121250600	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links