Variant report

Variant	rs7102477
Chromosome Location	chr11:121248069-121248070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10750191	0.94[ASN][1000 genomes]
rs12575786	0.99[ASN][1000 genomes]
rs12785891	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1560405	0.94[ASN][1000 genomes]
rs1560408	0.94[ASN][1000 genomes]
rs297490	0.81[EUR][1000 genomes]
rs297491	0.81[EUR][1000 genomes]
rs297492	0.80[EUR][1000 genomes]
rs57320113	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589879	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589880	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7102251	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7114953	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116595	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs99672	0.80[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7102477	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs7102477	C11orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
3	chr11:121242600-121251200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:121243000-121251000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr11:121244200-121248400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:121244200-121248400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:121244200-121249800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr11:121244200-121251200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr11:121244400-121248400	Weak transcription	Dnd41	blood
10	chr11:121244800-121260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:121245000-121249600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:121245000-121249600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:121245600-121251000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:121245800-121248800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:121246200-121249000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:121246200-121249600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:121246200-121250200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:121246400-121248600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr11:121246400-121248800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:121246400-121249600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:121246400-121249600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:121246400-121250800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr11:121246600-121249600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:121246800-121251200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:121247000-121251200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:121247000-121251200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr11:121247200-121249600	Weak transcription	Fetal Thymus	thymus
28	chr11:121247400-121248400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:121247600-121248800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:121247800-121248200	Weak transcription	Primary T cells from cord blood	blood
31	chr11:121247800-121250200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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