Variant report

Variant	rs297491
Chromosome Location	chr11:121255324-121255325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10750189	0.83[ASN][1000 genomes]
rs10750190	0.93[ASN][1000 genomes]
rs10750191	0.82[AMR][1000 genomes]
rs10790438	0.81[ASN][1000 genomes]
rs10790439	0.82[ASN][1000 genomes]
rs10790440	0.82[ASN][1000 genomes]
rs10790443	0.88[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10892740	0.82[ASN][1000 genomes]
rs10892741	0.82[ASN][1000 genomes]
rs10892743	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs10892744	1.00[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs11218274	0.88[ASN][1000 genomes]
rs11218281	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12785891	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1469535	0.88[ASN][1000 genomes]
rs1560405	0.80[AMR][1000 genomes]
rs1560406	0.93[ASN][1000 genomes]
rs1560408	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs190930	0.98[ASN][1000 genomes]
rs212501	0.99[ASN][1000 genomes]
rs2453144	0.99[ASN][1000 genomes]
rs2453145	0.99[ASN][1000 genomes]
rs2512091	0.98[ASN][1000 genomes]
rs297485	0.98[ASN][1000 genomes]
rs297486	0.98[ASN][1000 genomes]
rs297489	0.98[ASN][1000 genomes]
rs297490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297493	0.99[ASN][1000 genomes]
rs297520	0.98[ASN][1000 genomes]
rs297525	0.98[ASN][1000 genomes]
rs297526	0.93[ASN][1000 genomes]
rs4935769	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4936619	0.83[ASN][1000 genomes]
rs4936620	0.83[ASN][1000 genomes]
rs57320113	0.81[EUR][1000 genomes]
rs61856965	0.82[ASN][1000 genomes]
rs61903104	0.81[ASN][1000 genomes]
rs6589879	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6589880	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs662738	0.95[ASN][1000 genomes]
rs7102251	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7102477	0.81[EUR][1000 genomes]
rs7114953	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7116595	0.81[EUR][1000 genomes]
rs7117989	0.98[ASN][1000 genomes]
rs7128176	0.98[ASN][1000 genomes]
rs72992	0.93[ASN][1000 genomes]
rs7941466	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs891437	0.82[ASN][1000 genomes]
rs891438	0.83[ASN][1000 genomes]
rs903243	0.95[ASN][1000 genomes]
rs99672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs99673	0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs297491	ZNF202	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
2	chr11:121244800-121260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:121251200-121264800	Weak transcription	Primary T cells from cord blood	blood
4	chr11:121254000-121256000	Enhancers	Fetal Brain Male	brain
5	chr11:121254200-121259000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:121254400-121260600	Weak transcription	Right Atrium	heart
7	chr11:121254800-121262400	Weak transcription	Stomach Mucosa	stomach
8	chr11:121255000-121259600	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:121255000-121259600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:121255200-121256800	Weak transcription	Left Ventricle	heart
11	chr11:121255200-121260000	Weak transcription	Fetal Heart	heart
12	chr11:121255200-121264200	Weak transcription	Right Ventricle	heart

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