Variant report

Variant	rs61856965
Chromosome Location	chr10:88684222-88684223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:88469531..88471705-chr10:88682305..88685297,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10750189	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10750190	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10790438	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10790439	0.97[ASN][1000 genomes]
rs10790440	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10790443	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10892740	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892741	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892743	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10892744	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11218274	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1469535	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1560406	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1808581	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs190930	0.82[ASN][1000 genomes]
rs212501	0.83[ASN][1000 genomes]
rs2453144	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2453145	0.83[ASN][1000 genomes]
rs2512091	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs297485	0.82[ASN][1000 genomes]
rs297486	0.82[ASN][1000 genomes]
rs297489	0.82[ASN][1000 genomes]
rs297490	0.82[ASN][1000 genomes]
rs297491	0.82[ASN][1000 genomes]
rs297492	0.82[ASN][1000 genomes]
rs297493	0.83[ASN][1000 genomes]
rs297520	0.84[ASN][1000 genomes]
rs297525	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs297526	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4935769	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4936619	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4936620	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61903104	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7102251	0.83[ASN][1000 genomes]
rs7117989	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7128176	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72992	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941466	0.83[ASN][1000 genomes]
rs891437	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs891438	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs99672	0.82[ASN][1000 genomes]
rs99673	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042334	chr10:88479732-88847381	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540738	chr10:88479732-88847381	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2758234	chr10:88515058-89309762	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	esv2759774	chr10:88515058-89309762	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv817449	chr10:88582984-88689762	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv428236	chr10:88626616-89309762	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv517487	chr10:88659047-88733192	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	esv1826069	chr10:88683304-89311966	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:88659200-88699400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:88659400-88692400	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:88659600-88692000	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:88661200-88699400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:88662800-88696200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:88666600-88685000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:88667000-88696200	Weak transcription	Spleen	Spleen
8	chr10:88667200-88699400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:88668200-88692800	Weak transcription	Fetal Heart	heart
10	chr10:88670200-88692000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:88671200-88685600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:88671800-88687800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:88672000-88685400	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr10:88674400-88698600	Weak transcription	Stomach Mucosa	stomach
15	chr10:88678000-88694200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:88678000-88699400	Weak transcription	Colonic Mucosa	Colon
17	chr10:88678200-88686000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:88678200-88689000	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:88678200-88691600	Weak transcription	A549	lung
20	chr10:88678200-88692200	Weak transcription	Psoas Muscle	Psoas
21	chr10:88678200-88692400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:88678200-88696600	Weak transcription	NH-A	brain
23	chr10:88678200-88699000	Weak transcription	Hela-S3	cervix
24	chr10:88678600-88689200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:88679000-88684400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:88681200-88689800	Weak transcription	Aorta	Aorta
27	chr10:88681400-88699600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:88681600-88684400	Weak transcription	Primary T cells from cord blood	blood
29	chr10:88682200-88688200	Weak transcription	Fetal Brain Male	brain
30	chr10:88682600-88685400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:88682600-88687000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr10:88682600-88689000	Weak transcription	Pancreas	Pancrea
33	chr10:88682600-88693600	Weak transcription	Lung	lung
34	chr10:88682600-88693600	Weak transcription	K562	blood
35	chr10:88682800-88688800	Weak transcription	Placenta	Placenta
36	chr10:88682800-88689000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:88682800-88689000	Weak transcription	Colon Smooth Muscle	Colon
38	chr10:88682800-88689000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:88682800-88689000	Weak transcription	Gastric	stomach
40	chr10:88682800-88689200	Weak transcription	HSMMtube	muscle
41	chr10:88682800-88689800	Weak transcription	Right Ventricle	heart
42	chr10:88682800-88690400	Weak transcription	Brain Germinal Matrix	brain
43	chr10:88682800-88691600	Weak transcription	Small Intestine	intestine
44	chr10:88682800-88694000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:88682800-88699000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:88683000-88685200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr10:88683000-88687200	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:88683000-88687600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:88683000-88690000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr10:88683200-88685000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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