Variant report

Variant	rs10790443
Chromosome Location	chr11:121234131-121234132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10750189	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10750190	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10750191	0.80[AMR][1000 genomes]
rs10790438	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10790439	0.92[ASN][1000 genomes]
rs10790440	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10892740	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10892741	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10892743	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10892744	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11218274	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218281	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12575786	0.85[AMR][1000 genomes]
rs1469535	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560406	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1808581	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs190930	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs212501	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2453144	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2453145	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2512091	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs297485	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs297486	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs297489	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs297490	0.88[ASN][1000 genomes]
rs297491	0.88[ASN][1000 genomes]
rs297492	0.88[ASN][1000 genomes]
rs297493	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs297520	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs297525	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs297526	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4935769	0.84[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4936619	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4936620	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61856965	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61903104	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs662738	0.85[ASN][1000 genomes]
rs7102251	0.89[ASN][1000 genomes]
rs7117989	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7128176	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72992	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7941466	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs891437	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs891438	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs903243	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs99672	0.88[ASN][1000 genomes]
rs99673	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10790443	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs10790443	SLC37A4	cis	parietal	SCAN
rs10790443	C11orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121224200-121236000	Weak transcription	Fetal Brain Female	brain
2	chr11:121230800-121234200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:121231000-121235800	Weak transcription	Fetal Brain Male	brain
5	chr11:121231000-121238000	Weak transcription	Right Atrium	heart
6	chr11:121234000-121236400	Weak transcription	Fetal Muscle Leg	muscle

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