Variant report

Variant	rs61903104
Chromosome Location	chr11:121232034-121232035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BLID-9	chr11:121231367-121232052	NONHSAT024747

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10750189	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10750190	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10790438	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10790439	0.91[ASN][1000 genomes]
rs10790440	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10790443	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892740	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892741	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892743	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10892744	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11218274	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1469535	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1560406	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1808581	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs190930	0.81[ASN][1000 genomes]
rs212501	0.82[ASN][1000 genomes]
rs2453144	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2453145	0.82[ASN][1000 genomes]
rs2512091	0.81[ASN][1000 genomes]
rs297485	0.81[ASN][1000 genomes]
rs297486	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs297489	0.81[ASN][1000 genomes]
rs297490	0.81[ASN][1000 genomes]
rs297491	0.81[ASN][1000 genomes]
rs297492	0.81[ASN][1000 genomes]
rs297493	0.82[ASN][1000 genomes]
rs297520	0.82[ASN][1000 genomes]
rs297525	0.82[ASN][1000 genomes]
rs297526	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4935769	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4936619	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4936620	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61856965	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7102251	0.82[ASN][1000 genomes]
rs7117989	0.82[ASN][1000 genomes]
rs7128176	0.82[ASN][1000 genomes]
rs72992	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941466	0.82[ASN][1000 genomes]
rs891437	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs891438	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs99672	0.81[ASN][1000 genomes]
rs99673	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975987	chr11:121231771-121233603	Weak transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs61903104	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs61903104	C11orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121224200-121236000	Weak transcription	Fetal Brain Female	brain
2	chr11:121230800-121234200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:121231000-121235800	Weak transcription	Fetal Brain Male	brain
5	chr11:121231000-121238000	Weak transcription	Right Atrium	heart

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