Variant report

Variant	rs10892740
Chromosome Location	chr11:121225136-121225137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10750189	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10750190	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10790438	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10790439	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10790440	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790443	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10892737	0.87[AMR][1000 genomes]
rs10892741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892743	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10892744	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11218274	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1469535	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1560406	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1808581	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs190930	0.82[ASN][1000 genomes]
rs212501	0.82[ASN][1000 genomes]
rs2453144	0.82[ASN][1000 genomes]
rs2453145	0.82[ASN][1000 genomes]
rs2512091	0.82[ASN][1000 genomes]
rs297485	0.82[ASN][1000 genomes]
rs297486	0.82[ASN][1000 genomes]
rs297489	0.82[ASN][1000 genomes]
rs297490	0.82[ASN][1000 genomes]
rs297491	0.82[ASN][1000 genomes]
rs297492	0.82[ASN][1000 genomes]
rs297493	0.82[ASN][1000 genomes]
rs297520	0.83[ASN][1000 genomes]
rs297525	0.83[ASN][1000 genomes]
rs297526	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4935769	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4936619	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936620	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61856965	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61903104	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7102251	0.82[ASN][1000 genomes]
rs7117989	0.83[ASN][1000 genomes]
rs7128176	0.83[ASN][1000 genomes]
rs72992	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7941466	0.82[ASN][1000 genomes]
rs891437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891438	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs99672	0.82[ASN][1000 genomes]
rs99673	0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10892740	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs10892740	C11orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121219600-121225400	Weak transcription	Stomach Mucosa	stomach
2	chr11:121220400-121225200	Enhancers	Brain Germinal Matrix	brain
3	chr11:121221600-121228200	Weak transcription	Pancreas	Pancrea
4	chr11:121223800-121225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:121224000-121225200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:121224000-121228200	Weak transcription	Left Ventricle	heart
7	chr11:121224000-121230800	Weak transcription	Right Atrium	heart
8	chr11:121224200-121236000	Weak transcription	Fetal Brain Female	brain
9	chr11:121224600-121225200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:121224600-121229600	Weak transcription	Fetal Brain Male	brain
11	chr11:121225000-121228400	Weak transcription	Primary hematopoietic stem cells	blood

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