Variant report

Variant	rs99673
Chromosome Location	chr11:121255108-121255109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10750189	0.84[ASN][1000 genomes]
rs10750190	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10790438	0.82[ASN][1000 genomes]
rs10790439	0.82[ASN][1000 genomes]
rs10790440	0.82[ASN][1000 genomes]
rs10790443	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10892740	0.82[ASN][1000 genomes]
rs10892741	0.82[ASN][1000 genomes]
rs10892743	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10892744	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11218274	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11218281	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12575786	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1469535	0.89[ASN][1000 genomes]
rs1560406	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs190930	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs212501	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453144	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453145	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2512091	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297485	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297486	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297489	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297490	0.99[ASN][1000 genomes]
rs297491	0.99[ASN][1000 genomes]
rs297492	0.99[ASN][1000 genomes]
rs297493	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297520	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297525	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297526	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4935769	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4936619	0.84[ASN][1000 genomes]
rs4936620	0.84[ASN][1000 genomes]
rs61856965	0.83[ASN][1000 genomes]
rs61903104	0.82[ASN][1000 genomes]
rs662738	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7102251	0.98[ASN][1000 genomes]
rs7117989	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7128176	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72992	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7941466	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891437	0.82[ASN][1000 genomes]
rs891438	0.84[ASN][1000 genomes]
rs903243	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs99672	0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs99673	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs99673	C11orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
2	chr11:121244800-121260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:121251200-121264800	Weak transcription	Primary T cells from cord blood	blood
4	chr11:121253600-121255200	Enhancers	Fetal Heart	heart
5	chr11:121254000-121255200	Enhancers	Left Ventricle	heart
6	chr11:121254000-121256000	Enhancers	Fetal Brain Male	brain
7	chr11:121254200-121259000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:121254400-121260600	Weak transcription	Right Atrium	heart
9	chr11:121254800-121262400	Weak transcription	Stomach Mucosa	stomach
10	chr11:121255000-121255200	Enhancers	Right Ventricle	heart
11	chr11:121255000-121259600	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:121255000-121259600	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links