Variant report

Variant	rs903243
Chromosome Location	chr11:121259106-121259107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10750189	0.80[ASN][1000 genomes]
rs10750190	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10790443	0.89[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10892743	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10892744	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11218274	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11218281	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12575786	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1469535	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1560406	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs190930	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs212501	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2453144	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2453145	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2512091	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs297485	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs297486	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs297489	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs297490	0.95[ASN][1000 genomes]
rs297491	0.95[ASN][1000 genomes]
rs297492	0.95[ASN][1000 genomes]
rs297493	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs297520	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs297525	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs297526	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4935769	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4936619	0.80[ASN][1000 genomes]
rs4936620	0.80[ASN][1000 genomes]
rs662738	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102251	0.95[ASN][1000 genomes]
rs7117989	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128176	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72992	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7941466	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs891438	0.80[ASN][1000 genomes]
rs99672	0.95[ASN][1000 genomes]
rs99673	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs903243	C11orf32	Cis_1M	lymphoblastoid	RTeQTL
rs903243	SORL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
2	chr11:121244800-121260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:121251200-121264800	Weak transcription	Primary T cells from cord blood	blood
4	chr11:121254400-121260600	Weak transcription	Right Atrium	heart
5	chr11:121254800-121262400	Weak transcription	Stomach Mucosa	stomach
6	chr11:121255000-121259600	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:121255000-121259600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:121255200-121260000	Weak transcription	Fetal Heart	heart
9	chr11:121255200-121264200	Weak transcription	Right Ventricle	heart
10	chr11:121258000-121259600	Weak transcription	Fetal Brain Male	brain
11	chr11:121258200-121261400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:121259000-121260000	Enhancers	Pancreatic Islets	Pancreatic Islet

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