Variant report

Variant	rs4936619
Chromosome Location	chr11:121228469-121228470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10750189	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750190	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10790438	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10790439	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10790440	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10790443	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10892737	0.85[AMR][1000 genomes]
rs10892740	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892741	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892743	1.00[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10892744	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11218274	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1469535	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1560406	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1808581	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs190930	0.83[ASN][1000 genomes]
rs212501	0.84[ASN][1000 genomes]
rs2453144	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2453145	0.84[ASN][1000 genomes]
rs2512091	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs297485	0.83[ASN][1000 genomes]
rs297486	0.83[ASN][1000 genomes]
rs297489	0.83[ASN][1000 genomes]
rs297490	0.83[ASN][1000 genomes]
rs297491	0.83[ASN][1000 genomes]
rs297492	0.83[ASN][1000 genomes]
rs297493	0.84[ASN][1000 genomes]
rs297520	0.84[ASN][1000 genomes]
rs297525	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs297526	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4935769	1.00[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4936620	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856965	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61903104	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs662738	0.80[ASN][1000 genomes]
rs7102251	0.84[ASN][1000 genomes]
rs7117989	0.84[ASN][1000 genomes]
rs7128176	0.84[ASN][1000 genomes]
rs72992	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941466	0.84[ASN][1000 genomes]
rs891437	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs891438	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903243	0.80[ASN][1000 genomes]
rs99672	0.83[ASN][1000 genomes]
rs99673	0.84[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4936619	SORL1	Cis_1M	lymphoblastoid	RTeQTL
rs4936619	SLC37A4	cis	parietal	SCAN
rs4936619	C11orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121224000-121230800	Weak transcription	Right Atrium	heart
2	chr11:121224200-121236000	Weak transcription	Fetal Brain Female	brain
3	chr11:121224600-121229600	Weak transcription	Fetal Brain Male	brain
4	chr11:121227600-121228800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:121227800-121229600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:121228200-121228600	Enhancers	Gastric	stomach
7	chr11:121228200-121229400	Enhancers	Esophagus	oesophagus
8	chr11:121228200-121229400	Enhancers	Pancreas	Pancrea
9	chr11:121228400-121228800	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:121228400-121228800	Enhancers	Liver	Liver
11	chr11:121228400-121229600	Enhancers	Stomach Mucosa	stomach
12	chr11:121228400-121229600	Enhancers	HMEC	breast
13	chr11:121228400-121230400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:121228400-121230800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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