Variant report

Variant	rs10790438
Chromosome Location	chr11:121226192-121226193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10750189	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10750190	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10790439	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10790440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10790443	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892737	0.87[AMR][1000 genomes]
rs10892740	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892741	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892743	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10892744	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11218274	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1469535	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1560406	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1808581	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs190930	0.81[ASN][1000 genomes]
rs212501	0.82[ASN][1000 genomes]
rs2453144	0.82[ASN][1000 genomes]
rs2453145	0.82[ASN][1000 genomes]
rs2512091	0.81[ASN][1000 genomes]
rs297485	0.81[ASN][1000 genomes]
rs297486	0.81[ASN][1000 genomes]
rs297489	0.81[ASN][1000 genomes]
rs297490	0.81[ASN][1000 genomes]
rs297491	0.81[ASN][1000 genomes]
rs297492	0.81[ASN][1000 genomes]
rs297493	0.82[ASN][1000 genomes]
rs297520	0.82[ASN][1000 genomes]
rs297525	0.82[ASN][1000 genomes]
rs297526	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4935769	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4936619	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936620	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61856965	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61903104	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7102251	0.82[ASN][1000 genomes]
rs7117989	0.82[ASN][1000 genomes]
rs7128176	0.82[ASN][1000 genomes]
rs72992	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941466	0.82[ASN][1000 genomes]
rs891437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs891438	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs99672	0.81[ASN][1000 genomes]
rs99673	0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10790438	C11orf32	Cis_1M	lymphoblastoid	RTeQTL
rs10790438	SORL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121221600-121228200	Weak transcription	Pancreas	Pancrea
2	chr11:121224000-121228200	Weak transcription	Left Ventricle	heart
3	chr11:121224000-121230800	Weak transcription	Right Atrium	heart
4	chr11:121224200-121236000	Weak transcription	Fetal Brain Female	brain
5	chr11:121224600-121229600	Weak transcription	Fetal Brain Male	brain
6	chr11:121225000-121228400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:121225200-121227600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:121225400-121226800	Enhancers	Stomach Mucosa	stomach
9	chr11:121225600-121227200	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links