Variant report

Variant	rs1808581
Chromosome Location	chr11:121224315-121224316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10750189	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10750190	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10790438	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10790439	0.95[ASN][1000 genomes]
rs10790440	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10790443	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10892737	0.83[AMR][1000 genomes]
rs10892740	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10892741	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10892743	0.93[EUR][1000 genomes]
rs10892744	0.93[EUR][1000 genomes]
rs11218274	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1469535	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1560406	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs297526	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4935769	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4936619	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4936620	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61856965	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61903104	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72992	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs891437	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs891438	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1808581	C11orf32	Cis_1M	lymphoblastoid	RTeQTL
rs1808581	SORL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121219600-121225400	Weak transcription	Stomach Mucosa	stomach
2	chr11:121220400-121225200	Enhancers	Brain Germinal Matrix	brain
3	chr11:121221600-121228200	Weak transcription	Pancreas	Pancrea
4	chr11:121222000-121224600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:121222600-121224600	Enhancers	Fetal Brain Male	brain
6	chr11:121223800-121225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:121224000-121224400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:121224000-121225200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr11:121224000-121228200	Weak transcription	Left Ventricle	heart
10	chr11:121224000-121230800	Weak transcription	Right Atrium	heart
11	chr11:121224200-121236000	Weak transcription	Fetal Brain Female	brain

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