Variant report

Variant	rs6589893
Chromosome Location	chr11:121635924-121635925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10736509	0.81[EUR][1000 genomes]
rs10736510	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736511	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736512	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736513	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736514	0.90[ASN][1000 genomes]
rs10750194	0.90[ASN][1000 genomes]
rs10790455	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10790456	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10790457	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11218394	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17125802	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17337314	0.96[ASN][1000 genomes]
rs1893842	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1893844	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1893845	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1944673	0.86[ASN][1000 genomes]
rs1944674	0.86[ASN][1000 genomes]
rs1944677	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1944679	0.90[ASN][1000 genomes]
rs1944680	0.90[ASN][1000 genomes]
rs1944681	0.90[ASN][1000 genomes]
rs1944684	0.90[ASN][1000 genomes]
rs1944685	0.90[ASN][1000 genomes]
rs1944688	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1944689	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1944690	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1944692	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1944693	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1944694	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1944695	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2156665	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2187443	0.90[ASN][1000 genomes]
rs2226885	0.90[ASN][1000 genomes]
rs34551409	0.86[ASN][1000 genomes]
rs4245043	0.80[EUR][1000 genomes]
rs4450181	0.80[EUR][1000 genomes]
rs4561223	0.80[EUR][1000 genomes]
rs4936642	0.80[EUR][1000 genomes]
rs4936646	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936647	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936648	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936651	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936653	0.90[ASN][1000 genomes]
rs4936654	0.86[ASN][1000 genomes]
rs4936655	0.86[ASN][1000 genomes]
rs4936656	0.86[ASN][1000 genomes]
rs4936657	0.86[ASN][1000 genomes]
rs7105230	0.90[ASN][1000 genomes]
rs7106615	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106767	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7107004	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7109992	0.90[ASN][1000 genomes]
rs7115308	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115487	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120171	0.81[EUR][1000 genomes]
rs7123866	0.81[EUR][1000 genomes]
rs7124703	0.86[ASN][1000 genomes]
rs7131393	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7932213	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7936807	0.90[ASN][1000 genomes]
rs7937768	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7940099	0.90[ASN][1000 genomes]
rs7941422	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7945301	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7945672	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7945853	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7949483	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs949077	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs949079	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121628800-121636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:121633600-121638000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:121633800-121638400	Weak transcription	Right Atrium	heart
4	chr11:121634000-121637600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:121634000-121637800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:121634400-121636800	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:121634400-121637000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:121634400-121637000	Weak transcription	Fetal Brain Female	brain
9	chr11:121634400-121641600	Weak transcription	Fetal Heart	heart
10	chr11:121634400-121643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:121634600-121636000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:121634600-121636600	Weak transcription	Brain Anterior Caudate	brain
13	chr11:121634800-121636600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:121634800-121636600	Weak transcription	Brain Substantia Nigra	brain
15	chr11:121634800-121637000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:121634800-121637400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:121635000-121636600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr11:121635000-121637000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:121635000-121637400	Weak transcription	GM12878-XiMat	blood
20	chr11:121635200-121637200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:121635200-121638800	Enhancers	Fetal Stomach	stomach
22	chr11:121635400-121637000	Weak transcription	Primary B cells from cord blood	blood
23	chr11:121635600-121637400	Enhancers	Fetal Brain Male	brain

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