Variant report

Variant	rs10736509
Chromosome Location	chr11:121594124-121594125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10736508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736510	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10736511	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10736512	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10736513	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10790453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790455	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10790456	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10790457	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1111948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218394	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1699100	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1699101	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125802	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1893842	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1893844	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1893845	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1944677	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1944681	0.82[AMR][1000 genomes]
rs1944688	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1944689	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944690	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1944691	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944692	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1944693	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1944694	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1944695	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2156665	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2187443	0.81[AMR][1000 genomes]
rs2226886	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34614363	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35128164	0.84[AFR][1000 genomes]
rs4245043	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372460	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4450181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4561223	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490138	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4936642	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936644	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936646	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4936647	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4936648	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4936651	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4936653	0.81[AMR][1000 genomes]
rs4936657	0.81[AMR][1000 genomes]
rs496460	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs496586	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs499157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501840	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs507993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508851	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs519662	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs533875	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535768	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs540824	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs541772	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs558783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560711	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563265	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs564080	0.82[AMR][1000 genomes]
rs573970	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs583663	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs616412	0.80[AMR][1000 genomes]
rs618647	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs618931	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903026	0.81[AFR][1000 genomes]
rs619855	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620277	0.84[AFR][1000 genomes]
rs621271	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs632694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634920	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645409	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs648590	0.91[ASN][1000 genomes]
rs6589893	0.81[EUR][1000 genomes]
rs659435	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs662333	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs662388	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs663151	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs663617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663731	1.00[ASN][1000 genomes]
rs664424	1.00[ASN][1000 genomes]
rs664539	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs664885	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7106615	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7106767	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7107004	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7115308	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7115487	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7120171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123866	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131393	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7932213	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7937768	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7941422	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7945301	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7945672	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7945853	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7949483	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs92061	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949077	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs949079	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518668	chr11:121593385-121604656	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121592600-121594200	Active TSS	Brain Germinal Matrix	brain
2	chr11:121592800-121594200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:121592800-121594200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr11:121592800-121594200	Active TSS	Brain Anterior Caudate	brain
5	chr11:121592800-121594200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr11:121592800-121594200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
7	chr11:121592800-121594400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr11:121592800-121594400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr11:121592800-121594400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:121592800-121594400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr11:121592800-121594400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:121592800-121594400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:121592800-121594400	Active TSS	Brain Angular Gyrus	brain
14	chr11:121592800-121594400	Active TSS	Brain Cingulate Gyrus	brain
15	chr11:121592800-121594400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:121592800-121594600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:121592800-121594600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:121592800-121594600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:121592800-121594600	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr11:121592800-121594800	Active TSS	Brain Substantia Nigra	brain
21	chr11:121593000-121594200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:121593000-121594200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr11:121593000-121594200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:121593000-121594200	Active TSS	Fetal Kidney	kidney
25	chr11:121593000-121594200	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr11:121593000-121594200	Active TSS	Right Atrium	heart
27	chr11:121593000-121594400	Active TSS	H9 Cell Line	embryonic stem cell
28	chr11:121593000-121594400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:121593000-121594400	Active TSS	Aorta	Aorta
30	chr11:121593000-121594400	Enhancers	Esophagus	oesophagus
31	chr11:121593000-121594400	Flanking Active TSS	Fetal Muscle Leg	muscle
32	chr11:121593000-121594400	Active TSS	Ovary	ovary
33	chr11:121593000-121594600	Active TSS	Colon Smooth Muscle	Colon
34	chr11:121593000-121594600	Active TSS	Osteobl	bone
35	chr11:121593200-121594200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr11:121593200-121594200	Weak transcription	Fetal Heart	heart
37	chr11:121593200-121594200	Active TSS	Fetal Lung	lung
38	chr11:121593200-121594200	Active TSS	HSMMtube	muscle
39	chr11:121593200-121594200	Active TSS	NH-A	brain
40	chr11:121593200-121594400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:121593200-121594400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:121593200-121594400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:121593200-121594400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:121593200-121594400	Flanking Active TSS	Fetal Muscle Trunk	muscle
45	chr11:121593200-121594600	Flanking Active TSS	HUVEC	blood vessel
46	chr11:121593400-121594200	Active TSS	Left Ventricle	heart
47	chr11:121593400-121594200	Active TSS	NHDF-Ad	bronchial
48	chr11:121593400-121594400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
49	chr11:121593400-121594400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:121593400-121594400	Active TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links