Variant report

Variant	rs4936653
Chromosome Location	chr11:121648112-121648113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10736508	0.81[AMR][1000 genomes]
rs10736509	0.81[AMR][1000 genomes]
rs10736510	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10736511	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10736512	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10736513	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10736514	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750194	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790453	0.81[AMR][1000 genomes]
rs10790455	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10790456	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10790457	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10790459	0.81[EUR][1000 genomes]
rs10790461	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10892774	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1111948	0.81[AMR][1000 genomes]
rs1111950	0.81[AMR][1000 genomes]
rs11218394	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218403	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17125802	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17337314	0.90[ASN][1000 genomes]
rs1893842	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1893844	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1893845	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1944673	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944674	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944677	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1944678	0.81[EUR][1000 genomes]
rs1944679	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944680	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944681	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944682	0.81[EUR][1000 genomes]
rs1944683	0.81[EUR][1000 genomes]
rs1944684	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944685	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944686	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944687	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944688	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1944689	0.81[EUR][1000 genomes]
rs1944690	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1944691	0.81[AMR][1000 genomes]
rs1944692	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1944693	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1944694	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1944695	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2156664	0.82[EUR][1000 genomes]
rs2156665	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2187443	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226885	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226886	0.81[AMR][1000 genomes]
rs34551409	0.96[ASN][1000 genomes]
rs4245043	0.81[AMR][1000 genomes]
rs4450181	0.81[AMR][1000 genomes]
rs4561223	0.81[AMR][1000 genomes]
rs481201	0.81[AMR][1000 genomes]
rs481402	0.81[AMR][1000 genomes]
rs4935783	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4936642	0.81[AMR][1000 genomes]
rs4936646	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4936647	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4936648	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4936651	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4936654	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4936655	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4936656	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4936657	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs496586	0.81[AMR][1000 genomes]
rs499157	0.81[AMR][1000 genomes]
rs500172	0.81[AMR][1000 genomes]
rs507993	0.81[AMR][1000 genomes]
rs533875	0.82[AMR][1000 genomes]
rs558783	0.81[AMR][1000 genomes]
rs560711	0.81[AMR][1000 genomes]
rs618931	0.81[AMR][1000 genomes]
rs619855	0.81[AMR][1000 genomes]
rs621271	0.81[AMR][1000 genomes]
rs632694	0.81[AMR][1000 genomes]
rs633072	0.81[AMR][1000 genomes]
rs634920	0.81[AMR][1000 genomes]
rs6589893	0.90[ASN][1000 genomes]
rs6589895	0.82[EUR][1000 genomes]
rs663617	0.81[AMR][1000 genomes]
rs7105230	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106615	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7106767	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7107004	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7108855	0.81[EUR][1000 genomes]
rs7109992	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115308	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7115487	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7120171	0.81[AMR][1000 genomes]
rs7121084	0.81[EUR][1000 genomes]
rs7123866	0.82[AMR][1000 genomes]
rs7124703	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7131393	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932213	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932733	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7936807	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937768	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7940099	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941422	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7945301	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7945672	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7945853	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7949483	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs92061	0.81[AMR][1000 genomes]
rs949077	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs949079	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4936653	OR8A1	cis	cerebellum	SCAN
rs4936653	MPZL2	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121645600-121648200	Enhancers	Stomach Smooth Muscle	stomach
2	chr11:121647000-121648400	Enhancers	Rectal Smooth Muscle	rectum
3	chr11:121647000-121648600	Enhancers	Fetal Stomach	stomach
4	chr11:121647200-121648400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:121647200-121648400	Enhancers	Aorta	Aorta
6	chr11:121647200-121648400	Enhancers	Osteobl	bone
7	chr11:121647200-121648600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:121647400-121648200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:121647400-121648200	Enhancers	Colon Smooth Muscle	Colon
10	chr11:121647600-121648400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:121648000-121648200	Enhancers	Fetal Muscle Leg	muscle
12	chr11:121648000-121648400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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