Variant report

Variant	rs1944678
Chromosome Location	chr11:121646580-121646581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10736514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10750194	0.81[EUR][1000 genomes]
rs10790454	0.82[AMR][1000 genomes]
rs10790458	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790459	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10892774	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11218403	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1893841	0.81[AMR][1000 genomes]
rs1944679	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944680	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944681	0.81[EUR][1000 genomes]
rs1944682	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944684	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944685	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1944686	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1944687	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2156664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2187443	0.81[EUR][1000 genomes]
rs2226885	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4935783	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4935786	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4936649	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4936650	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4936653	0.81[EUR][1000 genomes]
rs4936654	0.81[EUR][1000 genomes]
rs4936655	0.81[EUR][1000 genomes]
rs4936656	0.81[EUR][1000 genomes]
rs4936657	0.81[EUR][1000 genomes]
rs6589894	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6589895	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7105230	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7108855	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109992	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7121084	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7124703	0.81[EUR][1000 genomes]
rs7932733	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7936807	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7937934	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7940099	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs949078	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1944678	C11orf63	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121637600-121648000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:121642800-121647000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:121642800-121647400	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:121645600-121648200	Enhancers	Stomach Smooth Muscle	stomach
5	chr11:121646200-121646600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:121646200-121646800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:121646400-121646600	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links