Variant report

Variant	rs10790458
Chromosome Location	chr11:121637343-121637344
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10790459	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1944678	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944682	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944683	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1944686	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1944687	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2156664	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4936649	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4936650	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6589895	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7108855	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7121084	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7932733	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7937934	0.84[AFR][1000 genomes]
rs949078	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121633600-121638000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:121633800-121638400	Weak transcription	Right Atrium	heart
3	chr11:121634000-121637600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:121634000-121637800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:121634400-121641600	Weak transcription	Fetal Heart	heart
6	chr11:121634400-121643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:121634800-121637400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:121635000-121637400	Weak transcription	GM12878-XiMat	blood
9	chr11:121635200-121638800	Enhancers	Fetal Stomach	stomach
10	chr11:121635600-121637400	Enhancers	Fetal Brain Male	brain
11	chr11:121636600-121637400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:121636600-121637600	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr11:121636600-121639200	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:121636800-121637400	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr11:121636800-121637600	Enhancers	Brain Hippocampus Middle	brain
16	chr11:121637000-121637400	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr11:121637000-121637600	Enhancers	Fetal Brain Female	brain
18	chr11:121637000-121638200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:121637000-121638600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr11:121637000-121638800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:121637000-121639000	Enhancers	Primary B cells from cord blood	blood
22	chr11:121637000-121639200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:121637200-121637400	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr11:121637200-121637400	Flanking Active TSS	Brain Substantia Nigra	brain
25	chr11:121637200-121637600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:121637200-121638400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:121637200-121638400	Weak transcription	Fetal Thymus	thymus

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