Variant report

Variant	rs6589895
Chromosome Location	chr11:121641968-121641969
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10736514	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10750194	0.82[EUR][1000 genomes]
rs10790454	0.80[AMR][1000 genomes]
rs10790458	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10790459	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892774	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11218403	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944678	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1944679	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944680	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944681	0.82[EUR][1000 genomes]
rs1944682	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1944683	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1944684	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944685	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944686	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1944687	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2156664	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187443	0.82[EUR][1000 genomes]
rs2226885	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4935783	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4935786	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4936649	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4936650	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4936653	0.82[EUR][1000 genomes]
rs4936654	0.82[EUR][1000 genomes]
rs4936655	0.82[EUR][1000 genomes]
rs4936656	0.82[EUR][1000 genomes]
rs4936657	0.82[EUR][1000 genomes]
rs6589894	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7105230	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7108855	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7109992	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7121084	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124703	0.82[EUR][1000 genomes]
rs7932733	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7936807	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7937934	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7940099	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs949078	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121634400-121643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:121637600-121643000	Weak transcription	Fetal Brain Female	brain
3	chr11:121637600-121648000	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:121638800-121643600	Weak transcription	Brain Germinal Matrix	brain
5	chr11:121641600-121642000	Enhancers	Fetal Heart	heart
6	chr11:121641600-121642800	Enhancers	Colon Smooth Muscle	Colon
7	chr11:121641600-121642800	Enhancers	Rectal Smooth Muscle	rectum
8	chr11:121641600-121643200	Enhancers	Fetal Stomach	stomach
9	chr11:121641800-121642800	Enhancers	Fetal Lung	lung
10	chr11:121641800-121642800	Enhancers	Stomach Smooth Muscle	stomach

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