Variant report

Variant	rs4936650
Chromosome Location	chr11:121633917-121633918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121632571..121635461-chr11:121638427..121640406,2	K562	blood:
2	chr11:121632571..121635609-chr11:121638427..121640448,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10736510	0.81[EUR][1000 genomes]
rs10736511	0.81[EUR][1000 genomes]
rs10736512	0.81[EUR][1000 genomes]
rs10736513	0.81[EUR][1000 genomes]
rs1074086	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10790452	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10790454	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10790455	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790456	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790457	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790458	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10790459	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1111949	0.83[AMR][1000 genomes]
rs11218394	0.81[EUR][1000 genomes]
rs17125802	0.81[EUR][1000 genomes]
rs1893841	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1893842	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1893844	0.81[EUR][1000 genomes]
rs1893845	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944677	0.81[EUR][1000 genomes]
rs1944678	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944682	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944683	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1944686	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1944687	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1944688	0.81[EUR][1000 genomes]
rs1944689	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944690	0.81[EUR][1000 genomes]
rs1944692	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944693	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944694	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944695	0.81[EUR][1000 genomes]
rs1944696	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2156664	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2156665	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4935786	0.81[AMR][1000 genomes]
rs4936646	0.81[EUR][1000 genomes]
rs4936647	0.81[EUR][1000 genomes]
rs4936648	0.81[EUR][1000 genomes]
rs4936649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936651	0.81[EUR][1000 genomes]
rs564080	0.84[EUR][1000 genomes]
rs616412	0.84[EUR][1000 genomes]
rs633277	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6589894	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6589895	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7106615	0.81[EUR][1000 genomes]
rs7106767	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7107004	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7108855	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7115308	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7115487	0.81[EUR][1000 genomes]
rs7121084	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7131393	0.81[EUR][1000 genomes]
rs7932213	0.81[EUR][1000 genomes]
rs7932733	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7937768	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7937934	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7941422	0.81[EUR][1000 genomes]
rs7945301	0.81[EUR][1000 genomes]
rs7945672	0.81[EUR][1000 genomes]
rs7945853	0.81[EUR][1000 genomes]
rs7949483	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs949077	0.81[EUR][1000 genomes]
rs949078	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs949079	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121628800-121636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:121632000-121634800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:121632000-121634800	Enhancers	Fetal Stomach	stomach
4	chr11:121632600-121634000	Enhancers	Fetal Muscle Trunk	muscle
5	chr11:121632600-121634000	Enhancers	Fetal Muscle Leg	muscle
6	chr11:121632800-121634200	Enhancers	Fetal Brain Male	brain
7	chr11:121633200-121634000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:121633200-121634000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:121633200-121635000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:121633200-121635000	Enhancers	Primary B cells from peripheral blood	blood
11	chr11:121633200-121635400	Enhancers	Primary B cells from cord blood	blood
12	chr11:121633400-121634000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:121633400-121634000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:121633400-121634000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:121633400-121634000	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr11:121633400-121634000	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr11:121633400-121634000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr11:121633400-121634000	Flanking Active TSS	Fetal Brain Female	brain
19	chr11:121633400-121634000	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr11:121633400-121634000	Enhancers	GM12878-XiMat	blood
21	chr11:121633400-121634000	Enhancers	NHLF	lung
22	chr11:121633400-121634400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr11:121633400-121634400	Enhancers	Fetal Lung	lung
24	chr11:121633600-121634000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:121633600-121634000	Enhancers	Primary hematopoietic stem cells	blood
26	chr11:121633600-121634000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:121633600-121634000	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr11:121633600-121634000	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr11:121633600-121634000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:121633600-121634000	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr11:121633600-121634000	Enhancers	Esophagus	oesophagus
32	chr11:121633600-121634000	Active TSS	Osteobl	bone
33	chr11:121633600-121634200	Enhancers	Ovary	ovary
34	chr11:121633600-121634200	Enhancers	NH-A	brain
35	chr11:121633600-121634400	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr11:121633600-121634400	Enhancers	Fetal Heart	heart
37	chr11:121633600-121634400	Enhancers	Rectal Smooth Muscle	rectum
38	chr11:121633600-121634800	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr11:121633600-121638000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:121633800-121634000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:121633800-121634200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:121633800-121634400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr11:121633800-121634400	Enhancers	Fetal Kidney	kidney
44	chr11:121633800-121634800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:121633800-121638400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links