Variant report

Variant	rs564080
Chromosome Location	chr11:121577440-121577441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10736508	0.82[AMR][1000 genomes]
rs10736509	0.82[AMR][1000 genomes]
rs1074086	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10790451	0.88[ASN][1000 genomes]
rs10790452	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10790453	0.82[AMR][1000 genomes]
rs10790454	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1111948	0.82[AMR][1000 genomes]
rs1111949	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1111950	0.82[AMR][1000 genomes]
rs1699100	0.86[AMR][1000 genomes]
rs1699101	0.86[AMR][1000 genomes]
rs1893841	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1944691	0.82[AMR][1000 genomes]
rs1944696	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2226886	0.82[AMR][1000 genomes]
rs4245043	0.82[AMR][1000 genomes]
rs4450181	0.82[AMR][1000 genomes]
rs4561223	0.82[AMR][1000 genomes]
rs481201	0.82[AMR][1000 genomes]
rs481402	0.82[AMR][1000 genomes]
rs490138	0.88[AMR][1000 genomes]
rs4936642	0.82[AMR][1000 genomes]
rs4936649	0.84[EUR][1000 genomes]
rs4936650	0.84[EUR][1000 genomes]
rs496460	0.88[AMR][1000 genomes]
rs496586	0.82[AMR][1000 genomes]
rs499157	0.82[AMR][1000 genomes]
rs500172	0.82[AMR][1000 genomes]
rs501840	0.88[AMR][1000 genomes]
rs507993	0.82[AMR][1000 genomes]
rs508851	0.88[AMR][1000 genomes]
rs533875	0.84[AMR][1000 genomes]
rs535768	0.88[AMR][1000 genomes]
rs540824	0.88[AMR][1000 genomes]
rs541772	0.88[AMR][1000 genomes]
rs558783	0.82[AMR][1000 genomes]
rs560711	0.82[AMR][1000 genomes]
rs563265	0.88[AMR][1000 genomes]
rs573970	0.88[AMR][1000 genomes]
rs616412	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs618647	0.88[AMR][1000 genomes]
rs618931	0.85[AMR][1000 genomes]
rs619855	0.85[AMR][1000 genomes]
rs621271	0.82[AMR][1000 genomes]
rs632694	0.82[AMR][1000 genomes]
rs633072	0.82[AMR][1000 genomes]
rs633277	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs634920	0.82[AMR][1000 genomes]
rs645409	0.88[AMR][1000 genomes]
rs6589894	0.83[EUR][1000 genomes]
rs659435	0.88[AMR][1000 genomes]
rs662333	0.88[AMR][1000 genomes]
rs662388	0.88[AMR][1000 genomes]
rs663151	0.88[AMR][1000 genomes]
rs663617	0.82[AMR][1000 genomes]
rs664539	0.88[AMR][1000 genomes]
rs664885	0.88[AMR][1000 genomes]
rs7120171	0.82[AMR][1000 genomes]
rs7123866	0.81[AMR][1000 genomes]
rs7937934	0.84[EUR][1000 genomes]
rs92061	0.82[AMR][1000 genomes]
rs949078	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121573800-121582600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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