Variant report

Variant	rs4561223
Chromosome Location	chr11:121592632-121592633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:75012214..75013088-chr11:121592371..121593332,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227540	Chromatin interaction
ENSG00000182180	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10736508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736510	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10736511	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10736512	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10736513	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10790453	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790455	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10790456	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10790457	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1111948	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111950	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218394	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1699100	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1699101	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125802	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1893842	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1893844	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1893845	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944677	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944681	0.82[AMR][1000 genomes]
rs1944688	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944689	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1944690	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944692	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944693	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944694	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1944695	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2156665	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2187443	0.81[AMR][1000 genomes]
rs2226886	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34614363	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35128164	0.88[AFR][1000 genomes]
rs4245043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372460	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4450181	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481201	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481402	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490138	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4936642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936644	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936646	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4936647	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4936648	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4936651	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4936653	0.81[AMR][1000 genomes]
rs4936657	0.81[AMR][1000 genomes]
rs496460	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs496586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs499157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501840	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs507993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508851	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs519662	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs533875	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535768	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs540824	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs541772	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs558783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560711	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563265	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs564080	0.82[AMR][1000 genomes]
rs573970	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs583663	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs616412	0.80[AMR][1000 genomes]
rs618647	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs618931	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903026	0.85[AFR][1000 genomes]
rs619855	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620277	0.88[AFR][1000 genomes]
rs621271	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs622170	0.82[AFR][1000 genomes]
rs632694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634920	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645409	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs648590	0.91[ASN][1000 genomes]
rs6589893	0.80[EUR][1000 genomes]
rs659435	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs662333	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs662388	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs663151	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs663617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663731	1.00[ASN][1000 genomes]
rs664424	1.00[ASN][1000 genomes]
rs664539	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs664885	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7106615	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7106767	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7107004	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7115308	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7115487	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7120171	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123866	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131393	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7932213	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7937768	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7941422	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7945301	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7945672	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7945853	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7949483	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs92061	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949077	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs949079	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121587200-121592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:121587400-121592800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:121592200-121592800	Enhancers	Colon Smooth Muscle	Colon
4	chr11:121592600-121592800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:121592600-121592800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:121592600-121592800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:121592600-121592800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:121592600-121592800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:121592600-121592800	Enhancers	Fetal Brain Male	brain
10	chr11:121592600-121592800	Enhancers	Rectal Smooth Muscle	rectum
11	chr11:121592600-121592800	Enhancers	Stomach Smooth Muscle	stomach
12	chr11:121592600-121593000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:121592600-121593000	Enhancers	HepG2	liver
14	chr11:121592600-121593200	Enhancers	Primary hematopoietic stem cells	blood
15	chr11:121592600-121593200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:121592600-121594000	Active TSS	Fetal Brain Female	brain
17	chr11:121592600-121594200	Active TSS	Brain Germinal Matrix	brain

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