Variant report

Variant	rs663731
Chromosome Location	chr11:121582777-121582778
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10736508	1.00[ASN][1000 genomes]
rs10736509	1.00[ASN][1000 genomes]
rs10790453	1.00[ASN][1000 genomes]
rs1111948	1.00[ASN][1000 genomes]
rs1111950	1.00[ASN][1000 genomes]
rs1699100	1.00[ASN][1000 genomes]
rs1699101	1.00[ASN][1000 genomes]
rs17337314	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1944691	1.00[ASN][1000 genomes]
rs2226886	1.00[ASN][1000 genomes]
rs4245043	1.00[ASN][1000 genomes]
rs4450181	1.00[ASN][1000 genomes]
rs4561223	1.00[ASN][1000 genomes]
rs481201	1.00[ASN][1000 genomes]
rs481402	1.00[ASN][1000 genomes]
rs490138	0.85[ASN][1000 genomes]
rs4936642	1.00[ASN][1000 genomes]
rs4936644	0.97[ASN][1000 genomes]
rs496460	0.82[ASN][1000 genomes]
rs496586	1.00[ASN][1000 genomes]
rs499157	1.00[ASN][1000 genomes]
rs500172	1.00[ASN][1000 genomes]
rs501840	0.97[ASN][1000 genomes]
rs507993	1.00[ASN][1000 genomes]
rs508851	0.85[ASN][1000 genomes]
rs533875	1.00[ASN][1000 genomes]
rs535768	0.91[ASN][1000 genomes]
rs540824	0.85[ASN][1000 genomes]
rs541772	0.85[ASN][1000 genomes]
rs558783	1.00[ASN][1000 genomes]
rs560711	1.00[ASN][1000 genomes]
rs563265	0.91[ASN][1000 genomes]
rs573970	0.85[ASN][1000 genomes]
rs618647	0.97[ASN][1000 genomes]
rs618931	1.00[ASN][1000 genomes]
rs619855	1.00[ASN][1000 genomes]
rs621271	0.94[ASN][1000 genomes]
rs632694	1.00[ASN][1000 genomes]
rs633072	1.00[ASN][1000 genomes]
rs634920	1.00[ASN][1000 genomes]
rs645409	0.82[ASN][1000 genomes]
rs648590	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs659435	0.85[ASN][1000 genomes]
rs662333	0.91[ASN][1000 genomes]
rs662388	0.91[ASN][1000 genomes]
rs663151	0.91[ASN][1000 genomes]
rs663617	1.00[ASN][1000 genomes]
rs664424	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664539	0.91[ASN][1000 genomes]
rs664885	0.91[ASN][1000 genomes]
rs7120171	1.00[ASN][1000 genomes]
rs7123866	1.00[ASN][1000 genomes]
rs92061	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121582200-121583200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:121582600-121583200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:121582600-121583400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:121582600-121583400	Enhancers	Cortex derived primary cultured neurospheres	brain

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