Variant report

Variant	rs490138
Chromosome Location	chr11:121572935-121572936
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10736508	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10736509	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10736510	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10736511	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10736512	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10736513	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10790453	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10790455	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10790456	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10790457	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1111948	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1111950	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11218394	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1699100	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1699101	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17125802	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1893842	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1893844	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1893845	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1944677	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1944688	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1944689	0.89[EUR][1000 genomes]
rs1944690	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1944691	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1944692	0.90[EUR][1000 genomes]
rs1944693	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1944694	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1944695	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2156665	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2226886	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34614363	0.81[AFR][1000 genomes]
rs35128164	0.82[AFR][1000 genomes]
rs4245043	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4372460	0.84[AFR][1000 genomes]
rs4450181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4561223	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs481201	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs481402	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4936642	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4936644	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4936646	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4936647	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4936648	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4936651	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs496460	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs496586	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs499157	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs500172	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs501840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs507993	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs508851	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519662	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs533875	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs535768	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs540824	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541772	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558783	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs560711	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs563265	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs564080	0.88[AMR][1000 genomes]
rs573970	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583663	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs616412	0.85[AMR][1000 genomes]
rs618647	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs618931	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs619855	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs620277	0.82[AFR][1000 genomes]
rs621271	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs632694	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs633072	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs633277	0.83[AMR][1000 genomes]
rs634920	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs645409	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs648590	0.93[ASN][1000 genomes]
rs659435	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662333	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs662388	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs663151	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs663617	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs663731	0.85[ASN][1000 genomes]
rs664424	0.85[ASN][1000 genomes]
rs664539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs664885	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7106615	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7106767	0.90[EUR][1000 genomes]
rs7107004	0.90[EUR][1000 genomes]
rs7115308	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7115487	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7120171	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7123866	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7131393	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7932213	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7937768	0.89[EUR][1000 genomes]
rs7941422	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7945301	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7945672	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7945853	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7949483	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs92061	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs949077	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs949079	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121568200-121573600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:121568200-121573600	Weak transcription	Fetal Stomach	stomach
3	chr11:121568200-121576600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:121572800-121573600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:121572800-121574200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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