Variant report

Variant	rs648590
Chromosome Location	chr11:121578426-121578427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10736508	0.91[ASN][1000 genomes]
rs10736509	0.91[ASN][1000 genomes]
rs10790453	0.91[ASN][1000 genomes]
rs1111948	0.91[ASN][1000 genomes]
rs1111950	0.91[ASN][1000 genomes]
rs1699100	0.91[ASN][1000 genomes]
rs1699101	0.91[ASN][1000 genomes]
rs17337314	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1944691	0.91[ASN][1000 genomes]
rs2226886	0.91[ASN][1000 genomes]
rs4245043	0.91[ASN][1000 genomes]
rs4450181	0.91[ASN][1000 genomes]
rs4561223	0.91[ASN][1000 genomes]
rs481201	0.91[ASN][1000 genomes]
rs481402	0.91[ASN][1000 genomes]
rs490138	0.93[ASN][1000 genomes]
rs4936642	0.91[ASN][1000 genomes]
rs4936644	0.88[ASN][1000 genomes]
rs496460	0.90[ASN][1000 genomes]
rs496586	0.91[ASN][1000 genomes]
rs499157	0.91[ASN][1000 genomes]
rs500172	0.91[ASN][1000 genomes]
rs501840	0.94[ASN][1000 genomes]
rs507993	0.91[ASN][1000 genomes]
rs508851	0.93[ASN][1000 genomes]
rs533875	0.91[ASN][1000 genomes]
rs535768	1.00[ASN][1000 genomes]
rs540824	0.93[ASN][1000 genomes]
rs541772	0.93[ASN][1000 genomes]
rs558783	0.91[ASN][1000 genomes]
rs560711	0.91[ASN][1000 genomes]
rs563265	1.00[ASN][1000 genomes]
rs573970	0.93[ASN][1000 genomes]
rs583663	0.81[ASN][1000 genomes]
rs618647	0.94[ASN][1000 genomes]
rs618931	0.91[ASN][1000 genomes]
rs619855	0.91[ASN][1000 genomes]
rs621271	0.85[ASN][1000 genomes]
rs632694	0.91[ASN][1000 genomes]
rs633072	0.91[ASN][1000 genomes]
rs634920	0.91[ASN][1000 genomes]
rs645409	0.90[ASN][1000 genomes]
rs659435	0.93[ASN][1000 genomes]
rs662333	1.00[ASN][1000 genomes]
rs662388	1.00[ASN][1000 genomes]
rs663151	1.00[ASN][1000 genomes]
rs663617	0.91[ASN][1000 genomes]
rs663731	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs664424	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs664539	1.00[ASN][1000 genomes]
rs664885	1.00[ASN][1000 genomes]
rs7120171	0.91[ASN][1000 genomes]
rs7123866	0.91[ASN][1000 genomes]
rs92061	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121573800-121582600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:121578200-121580200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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