Variant report

Variant	rs4372460
Chromosome Location	chr11:121592546-121592547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:75012214..75013088-chr11:121592371..121593332,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182180	Chromatin interaction
ENSG00000227540	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10736508	0.92[AFR][1000 genomes]
rs10736509	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10790453	0.92[AFR][1000 genomes]
rs1111948	0.92[AFR][1000 genomes]
rs1111950	0.92[AFR][1000 genomes]
rs1699100	0.91[AFR][1000 genomes]
rs1699101	0.91[AFR][1000 genomes]
rs1944691	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2226886	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34614363	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35128164	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4245043	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4450181	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4561223	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs481201	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs481402	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs490138	0.84[AFR][1000 genomes]
rs4936642	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs496460	0.83[AFR][1000 genomes]
rs496586	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs499157	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs500172	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs501840	0.91[AFR][1000 genomes]
rs507993	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs508851	0.85[AFR][1000 genomes]
rs519662	0.81[AFR][1000 genomes]
rs533875	0.89[AFR][1000 genomes]
rs535768	0.81[AFR][1000 genomes]
rs540824	0.81[AFR][1000 genomes]
rs541772	0.81[AFR][1000 genomes]
rs558783	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs560711	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs563265	0.81[AFR][1000 genomes]
rs618647	0.85[AFR][1000 genomes]
rs618931	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61903026	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs619855	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs620277	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs621271	0.89[AFR][1000 genomes]
rs622170	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs632694	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs633072	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs634920	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs645409	0.82[AFR][1000 genomes]
rs659435	0.82[AFR][1000 genomes]
rs662333	0.81[AFR][1000 genomes]
rs662388	0.81[AFR][1000 genomes]
rs663151	0.81[AFR][1000 genomes]
rs663617	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs664539	0.81[AFR][1000 genomes]
rs664885	0.81[AFR][1000 genomes]
rs7120171	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7123866	0.81[EUR][1000 genomes]
rs92061	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121587200-121592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:121587400-121592800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:121591400-121592600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:121592200-121592800	Enhancers	Colon Smooth Muscle	Colon
5	chr11:121592400-121592600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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