Variant report

Variant	rs620277
Chromosome Location	chr11:121585009-121585010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10736508	0.88[AFR][1000 genomes]
rs10736509	0.84[AFR][1000 genomes]
rs10790453	0.88[AFR][1000 genomes]
rs1111948	0.88[AFR][1000 genomes]
rs1111950	0.88[AFR][1000 genomes]
rs1699100	0.89[AFR][1000 genomes]
rs1699101	0.89[AFR][1000 genomes]
rs1944691	0.88[AFR][1000 genomes]
rs2226886	0.90[AFR][1000 genomes]
rs34614363	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35128164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4245043	0.87[AFR][1000 genomes]
rs4372460	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4450181	0.87[AFR][1000 genomes]
rs4561223	0.88[AFR][1000 genomes]
rs481201	0.88[AFR][1000 genomes]
rs481402	0.88[AFR][1000 genomes]
rs490138	0.82[AFR][1000 genomes]
rs4936642	0.81[AFR][1000 genomes]
rs496460	0.81[AFR][1000 genomes]
rs496586	0.88[AFR][1000 genomes]
rs499157	0.88[AFR][1000 genomes]
rs500172	0.88[AFR][1000 genomes]
rs501840	0.89[AFR][1000 genomes]
rs507993	0.89[AFR][1000 genomes]
rs508851	0.83[AFR][1000 genomes]
rs519662	0.82[AFR][1000 genomes]
rs533875	0.87[AFR][1000 genomes]
rs558783	0.88[AFR][1000 genomes]
rs560711	0.88[AFR][1000 genomes]
rs583663	0.84[AMR][1000 genomes]
rs618647	0.83[AFR][1000 genomes]
rs618931	0.89[AFR][1000 genomes]
rs61903026	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs619855	0.88[AFR][1000 genomes]
rs621271	0.87[AFR][1000 genomes]
rs622170	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs632694	0.88[AFR][1000 genomes]
rs633072	0.89[AFR][1000 genomes]
rs634920	0.88[AFR][1000 genomes]
rs663617	0.88[AFR][1000 genomes]
rs7120171	0.86[AFR][1000 genomes]
rs92061	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv556477	chr11:121584560-121585525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv17895	chr11:121584567-121586152	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121584800-121586200	Weak transcription	Aorta	Aorta
2	chr11:121585000-121588000	Enhancers	HSMM	muscle

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