Variant report

Variant	rs633277
Chromosome Location	chr11:121579484-121579485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1074086	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10790452	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10790454	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1699100	0.82[AMR][1000 genomes]
rs1699101	0.82[AMR][1000 genomes]
rs1893841	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1944696	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs490138	0.83[AMR][1000 genomes]
rs4936649	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4936650	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs496460	0.83[AMR][1000 genomes]
rs501840	0.83[AMR][1000 genomes]
rs508851	0.83[AMR][1000 genomes]
rs535768	0.83[AMR][1000 genomes]
rs540824	0.83[AMR][1000 genomes]
rs541772	0.83[AMR][1000 genomes]
rs563265	0.83[AMR][1000 genomes]
rs564080	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs573970	0.83[AMR][1000 genomes]
rs616412	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs618647	0.83[AMR][1000 genomes]
rs618931	0.80[AMR][1000 genomes]
rs619855	0.80[AMR][1000 genomes]
rs645409	0.83[AMR][1000 genomes]
rs6589894	0.84[EUR][1000 genomes]
rs659435	0.83[AMR][1000 genomes]
rs662333	0.83[AMR][1000 genomes]
rs662388	0.83[AMR][1000 genomes]
rs663151	0.83[AMR][1000 genomes]
rs664539	0.83[AMR][1000 genomes]
rs664885	0.83[AMR][1000 genomes]
rs7937934	0.85[EUR][1000 genomes]
rs949078	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121573800-121582600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:121578200-121580200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:121579400-121580000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr11:121579400-121580200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:121579400-121580200	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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