Variant report

Variant	rs4936649
Chromosome Location	chr11:121633563-121633564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121632571..121635461-chr11:121638427..121640406,2	K562	blood:
2	chr11:121632571..121635609-chr11:121638427..121640448,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10736510	0.81[EUR][1000 genomes]
rs10736511	0.81[EUR][1000 genomes]
rs10736512	0.81[EUR][1000 genomes]
rs10736513	0.81[EUR][1000 genomes]
rs1074086	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10790452	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10790454	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10790455	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790456	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790457	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790458	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10790459	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1111949	0.83[AMR][1000 genomes]
rs11218394	0.81[EUR][1000 genomes]
rs17125802	0.81[EUR][1000 genomes]
rs1893841	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1893842	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1893844	0.81[EUR][1000 genomes]
rs1893845	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944677	0.81[EUR][1000 genomes]
rs1944678	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944682	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944683	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1944686	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1944687	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1944688	0.81[EUR][1000 genomes]
rs1944689	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944690	0.81[EUR][1000 genomes]
rs1944692	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944693	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944694	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944695	0.81[EUR][1000 genomes]
rs1944696	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2156664	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2156665	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4935786	0.81[AMR][1000 genomes]
rs4936646	0.81[EUR][1000 genomes]
rs4936647	0.81[EUR][1000 genomes]
rs4936648	0.81[EUR][1000 genomes]
rs4936650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936651	0.81[EUR][1000 genomes]
rs564080	0.84[EUR][1000 genomes]
rs616412	0.84[EUR][1000 genomes]
rs633277	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6589894	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6589895	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7106615	0.81[EUR][1000 genomes]
rs7106767	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7107004	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7108855	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7115308	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7115487	0.81[EUR][1000 genomes]
rs7121084	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7131393	0.81[EUR][1000 genomes]
rs7932213	0.81[EUR][1000 genomes]
rs7932733	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7937768	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7937934	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7941422	0.81[EUR][1000 genomes]
rs7945301	0.81[EUR][1000 genomes]
rs7945672	0.81[EUR][1000 genomes]
rs7945853	0.81[EUR][1000 genomes]
rs7949483	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs949077	0.81[EUR][1000 genomes]
rs949078	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs949079	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753555	chr11:121630790-121646790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121625600-121633600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:121626200-121633800	Weak transcription	Fetal Kidney	kidney
3	chr11:121628800-121636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:121632000-121633600	Enhancers	Brain Anterior Caudate	brain
5	chr11:121632000-121634800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:121632000-121634800	Enhancers	Fetal Stomach	stomach
7	chr11:121632600-121634000	Enhancers	Fetal Muscle Trunk	muscle
8	chr11:121632600-121634000	Enhancers	Fetal Muscle Leg	muscle
9	chr11:121632800-121634200	Enhancers	Fetal Brain Male	brain
10	chr11:121633200-121633600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:121633200-121633600	Enhancers	Brain Substantia Nigra	brain
12	chr11:121633200-121634000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:121633200-121634000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:121633200-121635000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:121633200-121635000	Enhancers	Primary B cells from peripheral blood	blood
16	chr11:121633200-121635400	Enhancers	Primary B cells from cord blood	blood
17	chr11:121633400-121633600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:121633400-121633600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:121633400-121633600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:121633400-121633600	Enhancers	Brain Angular Gyrus	brain
21	chr11:121633400-121633600	Enhancers	Brain Cingulate Gyrus	brain
22	chr11:121633400-121633600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:121633400-121633800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:121633400-121633800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:121633400-121633800	Bivalent Enhancer	HMEC	breast
26	chr11:121633400-121633800	Bivalent Enhancer	NHEK	skin
27	chr11:121633400-121634000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:121633400-121634000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:121633400-121634000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:121633400-121634000	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr11:121633400-121634000	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr11:121633400-121634000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr11:121633400-121634000	Flanking Active TSS	Fetal Brain Female	brain
34	chr11:121633400-121634000	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr11:121633400-121634000	Enhancers	GM12878-XiMat	blood
36	chr11:121633400-121634000	Enhancers	NHLF	lung
37	chr11:121633400-121634400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr11:121633400-121634400	Enhancers	Fetal Lung	lung

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