Variant report

Variant	rs4935786
Chromosome Location	chr11:121661507-121661508
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10790459	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10892774	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11218403	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1944673	0.83[EUR][1000 genomes]
rs1944678	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1944682	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1944683	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1944686	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1944687	0.86[EUR][1000 genomes]
rs2156664	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4935783	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4936649	0.81[AMR][1000 genomes]
rs4936650	0.81[AMR][1000 genomes]
rs6589895	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7108855	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7109992	0.81[AMR][1000 genomes]
rs7121084	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7932733	0.86[EUR][1000 genomes]
rs7937934	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121660600-121664200	Weak transcription	Fetal Brain Male	brain
2	chr11:121660800-121661600	Enhancers	Fetal Heart	heart
3	chr11:121661400-121662400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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