Variant report

Variant	rs949078
Chromosome Location	chr11:121629007-121629008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10736510	0.80[EUR][1000 genomes]
rs10736511	0.80[EUR][1000 genomes]
rs10736512	0.80[EUR][1000 genomes]
rs10736513	0.80[EUR][1000 genomes]
rs1074086	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10790452	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10790454	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10790455	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10790456	0.80[AMR][1000 genomes]
rs10790457	0.80[EUR][1000 genomes]
rs10790458	0.82[AFR][1000 genomes]
rs10790459	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1111949	0.82[AMR][1000 genomes]
rs11218394	0.80[EUR][1000 genomes]
rs17125802	0.80[EUR][1000 genomes]
rs1893841	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1893842	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1893844	0.80[EUR][1000 genomes]
rs1893845	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1944677	0.80[EUR][1000 genomes]
rs1944678	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944682	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1944683	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1944686	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1944687	0.84[EUR][1000 genomes]
rs1944688	0.80[EUR][1000 genomes]
rs1944689	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944690	0.80[EUR][1000 genomes]
rs1944692	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1944693	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1944694	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1944695	0.80[EUR][1000 genomes]
rs1944696	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2156664	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2156665	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4936646	0.80[EUR][1000 genomes]
rs4936647	0.80[EUR][1000 genomes]
rs4936648	0.80[EUR][1000 genomes]
rs4936649	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4936650	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4936651	0.80[EUR][1000 genomes]
rs564080	0.84[EUR][1000 genomes]
rs616412	0.84[EUR][1000 genomes]
rs633277	0.85[EUR][1000 genomes]
rs6589894	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6589895	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7106615	0.80[EUR][1000 genomes]
rs7106767	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7107004	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7108855	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7115308	0.80[AMR][1000 genomes]
rs7115487	0.80[EUR][1000 genomes]
rs7121084	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7131393	0.80[EUR][1000 genomes]
rs7932213	0.80[EUR][1000 genomes]
rs7932733	0.85[EUR][1000 genomes]
rs7937768	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7937934	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7941422	0.80[EUR][1000 genomes]
rs7945301	0.80[EUR][1000 genomes]
rs7945672	0.80[EUR][1000 genomes]
rs7945853	0.80[EUR][1000 genomes]
rs7949483	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs949077	0.80[EUR][1000 genomes]
rs949079	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121620800-121632000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:121625600-121633600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:121625800-121632800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:121626200-121633800	Weak transcription	Fetal Kidney	kidney
5	chr11:121626400-121633200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:121627000-121633200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:121627200-121633200	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:121627200-121633400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:121627600-121629200	Enhancers	Aorta	Aorta
10	chr11:121628200-121629200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:121628200-121632200	Weak transcription	Fetal Brain Female	brain
12	chr11:121628400-121632000	Weak transcription	Fetal Stomach	stomach
13	chr11:121628600-121632000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:121628800-121633200	Weak transcription	Brain Substantia Nigra	brain
15	chr11:121628800-121636200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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