Variant report

Variant	rs6592635
Chromosome Location	chr11:76148197-76148198
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76142850..76144735-chr11:76148116..76151075,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10160382	0.84[CEU][hapmap]
rs10793167	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793169	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793171	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10899217	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10899222	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10899225	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899227	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs11236749	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236752	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17450692	0.85[CEU][hapmap]
rs2282611	0.84[CEU][hapmap]
rs2508740	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2508741	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs2508753	0.80[EUR][1000 genomes]
rs2508760	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508761	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs2508762	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2513504	0.85[CEU][hapmap]
rs2513505	0.81[AFR][1000 genomes]
rs2513508	0.88[CEU][hapmap]
rs2513513	0.84[CEU][hapmap]
rs2513520	0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2513525	0.84[CEU][hapmap]
rs3814711	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4245443	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4272809	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4300410	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945090	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5023625	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106564	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7107058	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109548	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7123361	0.84[CEU][hapmap]
rs7926009	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927515	0.85[CEU][hapmap]
rs7941790	0.85[CEU][hapmap]
rs8848	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3486155	chr11:76141104-76149702	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3486153	chr11:76141554-76149552	Weak transcription ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3486157	chr11:76142163-76148678	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3462818	chr11:76142193-76148662	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3486154	chr11:76142229-76148626	ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3462807	chr11:76142239-76148640	Weak transcription Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3462796	chr11:76142257-76148619	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3486151	chr11:76142263-76148607	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3462774	chr11:76142265-76148575	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3462785	chr11:76142314-76148556	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3486156	chr11:76142324-76148556	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3462829	chr11:76142328-76148554	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3486158	chr11:76142328-76148554	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv19773	chr11:76142373-76148527	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv2421502	chr11:76143017-76148285	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv442622	chr11:76143017-76148285	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv2760197	chr11:76143019-76153868	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76144000-76154000	Weak transcription	Left Ventricle	heart
2	chr11:76145600-76153600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:76146000-76152400	Weak transcription	Fetal Intestine Small	intestine
4	chr11:76147200-76148600	Enhancers	K562	blood
5	chr11:76147600-76150800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:76147600-76154400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:76148000-76154400	Weak transcription	HSMM	muscle

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