Variant report

Variant	rs6593664
Chromosome Location	chr1:95556560-95556561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12026574	1.00[ASN][1000 genomes]
rs12028101	1.00[ASN][1000 genomes]
rs12040604	1.00[ASN][1000 genomes]
rs12048008	0.86[ASN][1000 genomes]
rs57591007	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57765682	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58056748	0.85[EUR][1000 genomes]
rs58810066	0.83[EUR][1000 genomes]
rs60433630	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61211591	0.89[EUR][1000 genomes]
rs61231950	0.83[EUR][1000 genomes]
rs72720237	0.83[EUR][1000 genomes]
rs72720242	0.83[EUR][1000 genomes]
rs72720244	0.83[EUR][1000 genomes]
rs72720246	0.83[EUR][1000 genomes]
rs72720251	0.83[EUR][1000 genomes]
rs72720252	0.83[EUR][1000 genomes]
rs72720259	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95551800-95557800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:95552400-95556600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:95554200-95558400	Weak transcription	HepG2	liver
4	chr1:95554200-95564000	Weak transcription	Osteobl	bone
5	chr1:95555600-95558600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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